Galaxy is an open, web-based platform for data intensive biomedical research. Through its web interface, a user with no previous programming experience can design complex pipelines and deploy them on a HPC facility using the full capability of the supercomputer or Cloud resources. GenAP offers the ability to use your own privately accessed Galaxy instance, loaded with 600+ preinstalled tools. The GenAP Galaxy is fully integrated with the GenAP infrastructure, allowing users to leverage storage and compute resources as well as interact with other GenAP applications.
Below you will find quick links to a list of useful tutorials, mainly developed by the Galaxy community, covering themes such as how to get started, how to manipulate data and user interface and other features. You will also find more advanced scientific tutorials on Genome Assembly, Transcriptomics, Sequence Analysis and other subjects.
Galaxy-GenAP Basics
Galaxy Basics
Lesson | Slides | Hands-on | Inputs |
---|---|---|---|
Introduction to Galaxy | |||
A short introduction to Galaxy | |||
Galaxy 101 | |||
NGS data logistics |
Data Manipulation
Lesson | Slides | Hands-on | Inputs |
---|---|---|---|
Collections: Multisample Analysis | |||
Collections: Rule Based Uploader | |||
Name tags for following complex histories | |||
Group tags for complex experimental designs |
User Interface and Features
Lesson | Slides | Hands-on | Inputs |
---|---|---|---|
Histories: Understanding Galaxy history system | |||
Workflows: Extracting Workflows from Histories | |||
Workflows: Using Workflow Parameters |
Scientific Analysis
Assembly
Genome Annotation
Lesson | Slides | Hands-on | Inputs |
---|---|---|---|
Introduction to Genome Annotation | |||
Essential genes detection with Transposon insertion sequencing | |||
Genome annotation with Maker | |||
Genome annotation with Prokka |